[Fri Jun 30 11:54:18 CST 2023] [MD] [warn] 'Starting MedeA Core 3.6.0' Forcefield set to: pcff+ File: Local::/home/medea/MD/Jobs/dir0/119/pcff+.frc md5 sum: 271FB553B535FE0449E31A6F8A0898D3 MedeA version 3.6.0 #------------------------------------------------------------------------------- # This calculation has 2 stages #------------------------------------------------------------------------------- Stage 1: Variables tstep = 1 fs T = 298.15 K P = 1 atm Stage 2: This LAMMPS calculation has 6 stages: Stage 2.1: Initialize LAMMPS for a Class 2 type of forcefield 'pcff+' (from Local::/home/medea/MD/Jobs/dir0/119/pcff+.frc) Current system formula: K94Na8Li30Mg616S93Cl1178O8675H16606 (K94Na8Li30Mg616S93Cl1178O8675H16606) The nonbond terms are handled with a simple cutoff at 9.5 Angstrom. The long-range van der Waals interactions are included via tail corrections. LAMMPS initialized for layer perpendicular to Z. Stage 2.2: Minimize using conjugate gradients and linesearch fast Relative energy convergence: 0.0 Force convergence: 1.0 Maximum atomic motion: 0.05 Maximum number of iterations: 1000 Maximum number of force evaluations: 10000 Stage 2.3: Set the velocities for 298.15 K Stage 2.4: NPT integration for 200 ps with a timestep of 1 fs P is 1 atm with cell constrained isotropically T is 298.15 K Stage 2.5: NVT integration for 200 ps with a timestep of 1 fs T is 298.15 K Stage 2.6: Surface tension calculation using NVT integration for 200 ps with a timestep of 1 fs, T is 298.15 K #------------------------------------------------------------------------------- # Running the calculation #------------------------------------------------------------------------------- Stage 1: Variables tstep = 1 fs T = 298.15 K P = 1 atm Stage 2: This LAMMPS calculation has 6 stages: ***** LAMMPS error in LAMMPS.out ***** ERROR: Cannot use fix nvt/npt/nph on a non-periodic dimension (../fix_nh.cpp:394) ************************************** Stage 2.1: Initialize LAMMPS for a Class 2 type of forcefield 'pcff+' (from Local::/home/medea/MD/Jobs/dir0/119/pcff+.frc) Current system formula: K94Na8Li30Mg616S93Cl1178O8675H16606 (K94Na8Li30Mg616S93Cl1178O8675H16606) The nonbond terms are handled with a simple cutoff at 9.5 Angstrom. The long-range van der Waals interactions are included via tail corrections. LAMMPS initialized for layer perpendicular to Z. Stage 2.2: Minimize using conjugate gradients and linesearch fast Relative energy convergence: 0.0 Force convergence: 1.0 Maximum atomic motion: 0.05 Maximum number of iterations: 1000 Maximum number of force evaluations: 10000 Note: 2.2_Minimization.out contains warning messages from LAMMPS - examine this file for additional information. The minimization finished after 4 steps ending because the linesearch alpha is zero Property Value Units ------------------ ---------- ----------- nSteps: 4 Initial Fmax: 54485.1 kJ/mol/Ang Fmax: 1615222.9 kJ/mol/Ang Initial Frms: 3542.5 kJ/mol/Ang Frms: 16470.6 kJ/mol/Ang P: 213871.8 atm V: 285015.2 Ang^3 rho: 1.2778 g/mL Sxx: -184252.6 atm Syy: -264314.6 atm Szz: -193048.1 atm Syz: 49118.1 atm Sxz: 3752.0 atm Sxy: 7037.7 atm Initial Epot: 4051982.5 kJ/mol Epot: 1634710.3 kJ/mol a: 79.1497 Ang b: 76.7349 Ang c: 46.9273 Ang alpha: 90.00 degree beta: 90.00 degree gamma: 90.00 degree sum_fx: -0.0 kJ/mol/Ang sum_fy: -0.0 kJ/mol/Ang sum_fz: -0.0 kJ/mol/Ang Stage 2.3: Set the velocities for 298.15 K Stage 2.4: NPT integration for 200 ps with a timestep of 1 fs P is 1 atm with cell constrained isotropically T is 298.15 K Stage 2.5: NVT integration for 200 ps with a timestep of 1 fs T is 298.15 K Stage 2.6: Surface tension calculation using NVT integration for 200 ps with a timestep of 1 fs, T is 298.15 K ********************************************* WARNING: this LAMMPS stage completed on Fri 30 June 2023 at 11:54:35 CST after 9 s (0:00:09) with the following error: ERROR: Cannot use fix nvt/npt/nph on a non-periodic dimension (../fix_nh.cpp:394) ********************************************* Entire job completed on Fri 30 June 2023 at 11:54:35 CST after 9 s (0:00:09) and running 1 tasks.