[Thu Nov 16 10:38:46 CST 2023] [MD] [warn] 'Starting MedeA Core 3.6.0' Forcefield set to: pcff+ File: Local::/home/medea/MD/Jobs/dir500/679/pcff+.frc md5 sum: 271FB553B535FE0449E31A6F8A0898D3 MedeA version 3.6.0 #------------------------------------------------------------------------------- # This calculation has 2 stages #------------------------------------------------------------------------------- Stage 1: Variables tstep = 1 fs T = 298.2 K P = 1 bar Stage 2: This LAMMPS calculation has 5 stages: Stage 2.1: Initialize LAMMPS for a Class 2 type of forcefield 'pcff+' (from Local::/home/medea/MD/Jobs/dir500/679/pcff+.frc) Current system formula: K40Na866Li7Mg151S31Cl1153O2936H5624 (K40Na866Li7Mg151S31Cl1153O2936H5624) The nonbond terms are handled with a cutoff at 12 Angstrom. The long-range Coulomb interactions are handled with the pppm method to a precision of 0.00001. The long-range van der Waals interactions are included via tail corrections. Stage 2.2: Minimize using conjugate gradients and linesearch fast Relative energy convergence: 0.0 Force convergence: 1.0 Maximum atomic motion: 0.05 Maximum number of iterations: 3000 Maximum number of force evaluations: 10000 Stage 2.3: Set the velocities for 298.2 K Stage 2.4: NVT integration for 1 ns with a timestep of 1 fs T is 298.2 K Stage 2.5: NVT integration for 3 ns with a timestep of 1 fs T is 298.2 K #------------------------------------------------------------------------------- # Running the calculation #------------------------------------------------------------------------------- Stage 1: Variables tstep = 1 fs T = 298.2 K P = 1 bar Stage 2: This LAMMPS calculation has 5 stages: Stage 2.1: Initialize LAMMPS for a Class 2 type of forcefield 'pcff+' (from Local::/home/medea/MD/Jobs/dir500/679/pcff+.frc) Current system formula: K40Na866Li7Mg151S31Cl1153O2936H5624 (K40Na866Li7Mg151S31Cl1153O2936H5624) The nonbond terms are handled with a cutoff at 12 Angstrom. The long-range Coulomb interactions are handled with the pppm method to a precision of 0.00001. The long-range van der Waals interactions are included via tail corrections. Stage 2.2: Minimize using conjugate gradients and linesearch fast Relative energy convergence: 0.0 Force convergence: 1.0 Maximum atomic motion: 0.05 Maximum number of iterations: 3000 Maximum number of force evaluations: 10000 Note: 2.2_Minimization.out contains warning messages from LAMMPS - examine this file for additional information. The minimization finished after 3000 steps ending because the max iterations Property Value Units ------------------ ---------- ----------- nSteps: 3000 Initial Fmax: 361.1 kJ/mol/Ang Fmax: 1.1 kJ/mol/Ang Initial Frms: 125.9 kJ/mol/Ang Frms: 0.1 kJ/mol/Ang P: -5900.0 atm V: 141184.1 Ang^3 rho: 1.4079 g/mL Sxx: 6036.9 atm Syy: 6190.6 atm Szz: 5472.4 atm Syz: -4.1 atm Sxz: 190.7 atm Sxy: 36.1 atm Initial Epot: -1200276.3 kJ/mol Epot: -1250537.3 kJ/mol a: 36.8271 Ang b: 36.8271 Ang c: 104.1000 Ang alpha: 90.00 degree beta: 90.00 degree gamma: 90.00 degree sum_fx: 6.9 kJ/mol/Ang sum_fy: 2.8 kJ/mol/Ang sum_fz: 40.3 kJ/mol/Ang Stage 2.3: Set the velocities for 298.2 K Stage 2.4: NVT integration for 1 ns with a timestep of 1 fs T is 298.2 K Property Value +/- Uncertainty Units After Steps % Run ------------------ ---------- ----------- ------------- ------------ ------- t: 1000000.0 fs T: 298.11 +/- 0.13 K 0 0.0% P: -261 +/- 15 atm 0 0.0% V: 141184 +/- 0 Ang^3 0 0.0% rho: 1.40793 +/- 0 g/mL 0 0.0% Etotal: -1175110 +/- 110 kJ/mol 0 0.0% Epot: -1203630 +/- 110 kJ/mol 0 0.0% Ekin: 28520 +/- 13 kJ/mol 0 0.0% Evdw: 133680 +/- 45 kJ/mol 0 0.0% Ecoul: -1337800 +/- 120 kJ/mol 0 0.0% Sxx: -166 +/- 17 atm 0 0.0% Syy: -175 +/- 23 atm 0 0.0% Szz: 1125 +/- 29 atm 0 0.0% Syz: 6 +/- 14 atm 0 0.0% Sxz: -6 +/- 12 atm 0 0.0% Sxy: -2 +/- 11 atm 0 0.0% Stage 2.5: NVT integration for 3 ns with a timestep of 1 fs T is 298.2 K Property Value +/- Uncertainty Units After Steps % Run ------------------ ---------- ----------- ------------- ------------ ------- t: 3000000.0 fs T: 298.223 +/- 0.048 K 0 0.0% P: -225 +/- 13 atm 0 0.0% V: 141184 +/- 0 Ang^3 0 0.0% rho: 1.40793 +/- 0 g/mL 0 0.0% Etotal: -1175184 +/- 40 kJ/mol 0 0.0% Epot: -1203715 +/- 40 kJ/mol 0 0.0% Ekin: 28531.1 +/- 4.6 kJ/mol 0 0.0% Evdw: 133709 +/- 32 kJ/mol 0 0.0% Ecoul: -1337901 +/- 67 kJ/mol 0 0.0% Sxx: -216 +/- 18 atm 0 0.0% Syy: -207 +/- 13 atm 0 0.0% Szz: 1096 +/- 18 atm 0 0.0% Syz: 0.7 +/- 8.2 atm 0 0.0% Sxz: -3.6 +/- 7.7 atm 0 0.0% Sxy: -2.9 +/- 6.5 atm 0 0.0% LAMMPS stage successfully completed on 32 core(s) on Thu 16 November 2023 at 21:28:15 CST after 38962 s (10:49:22) Entire job completed on Thu 16 November 2023 at 21:28:15 CST after 38962 s (10:49:22) and running 1 tasks.